High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq

High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq

Summary table

Experimental evidence
Target	N/A
Modified position	N/A
Modified nucleotide	N/A
Strand	N/A
snoRNA ID	N/A
snoRNA name	N/A
snoRNA family	N/A
Type of snoRNA	N/A
Is snoRNA orphan	N/A
Averaged probability over chimeric read data sets	N/A
Nr of supporting chimeric read data sets	N/A
Total number of chimeric reads supporting interaction	N/A
Averaged angle score over RiboMeth seq experiments	N/A
RiM seq score	N/A
Interaction energy (PLEXY)	N/A
Target type	N/A
Prior evidence for the snoRNA target interaction	N/A
Prior evidence for the 2'O methylation	N/A
CLIP FBL T1RNase hs HEK rep1	N/A
CLIP FBL T1RNase hs HEK rep2	N/A
CLIP FBL MNase hs HEK	N/A
CLIP NOP56 T1RNase hs HEK
CLIP NOP58 T1RNase hs HEK rep1	N/A
CLIP NOP58 T1RNase hs HEK rep2	N/A
RiboMethSeq HEK polyARNA 8min	N/A
RiboMethSeq HEK totalRNA 8min	N/A
RiboMethSeq HEK totalRNA 14min	N/A
RiboMethSeq HEK totalRNA 20min	N/A
RibomethSeq HEK cytoplasmic1 14min	N/A
RibomethSeq HEK cytoplasmic2 14min	N/A
RibomethSeq HEK nuclear1 14min	N/A
ENSEMBL ID	N/A
Target name	N/A
Gene region	N/A
Transcript domain

Predicted hybrid structure

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snoRNA

Target

Alignments of chimeric reads to snoRNA and targets

Alignment to snoRNA

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Alignment to RNA target

Alignment +- 40 nucleotides centered on the predicted methylation site.

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